PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00544
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 505aa    MW: 54224.6 Da    PI: 8.6687
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00544genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.51.5e-105074327
                S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                 + C +++rtG C yG+rC+++H++
  AA21G00544 50 APDCAYYMRTGVCGYGGRCRYNHPR 74
                589********************96 PP

2zf-CCCH40.64.2e-1394119227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C+f+++tG Ck+G++CkF+H++
  AA21G00544  94 GEPPCQFYLKTGACKFGASCKFHHPK 119
                 579*********************96 PP

3zf-CCCH36.39.4e-12140165227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C+++++tG+Ck+G +CkF+H+p
  AA21G00544 140 GEKECSYYLKTGQCKFGITCKFHHPP 165
                 5789********************97 PP

4zf-CCCH38.81.5e-12324350127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C+++++tG Ck+G++CkF+H++
  AA21G00544 324 PGEAECQYYLKTGDCKFGSSCKFHHPR 350
                 5789*********************96 PP

5zf-CCCH29.99.7e-10371396227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 +  +C f+ ++G+Ck+G++Ck+ H++
  AA21G00544 371 GVQRCTFYIQNGFCKFGSTCKYDHPM 396
                 6779********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-54774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3944775IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-85074IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-45374IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-792119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.82692120IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-1094119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-695120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-597118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.737138166IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-6138165IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-9140165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5141165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4144163IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-6323350IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338323351IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-10325350IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6327352IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5329351IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4369396IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155369397IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6371396IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6371400IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4375394IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MEMYGRNPPM NGSQSAQGAE WSPGDAETGL EESMWRLGLG SETYPERPGA PDCAYYMRTG  60
VCGYGGRCRY NHPRDRATVE ATVRATGQYP ERLGEPPCQF YLKTGACKFG ASCKFHHPKN  120
AGGSMSDVPL NIYGYPIREG EKECSYYLKT GQCKFGITCK FHHPPPAGTT VPAASAPQFY  180
PSVQSIIPEQ FGGPSSSLRV ARPLLPGSYM QGAYGPMLLT PGVVPIPGWS PYSVHINLRF  240
VLSIHTFTDL QNSVFTLLLV HLVQAPVSPA LSPGAQHAVG ATSLYGVTQL SSTAPSLGGV  300
YPSLSSPTAP SVGIQKEQSF PERPGEAECQ YYLKTGDCKF GSSCKFHHPR DRVPPRANCI  360
LSPIGLPIRP GVQRCTFYIQ NGFCKFGSTC KYDHPMGTIR YNPSASSLTD APVAPYPVGS  420
LLGALVAAPS SSPSELRPEL ISGSAKDAYL TGLPTSRSTS SISAGLIFSQ SGSIPFSELQ  480
LPSQASLPLT SSRITRQGRE IRRSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0303910.0BT030391.1 Arabidopsis thaliana At2g47850 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294141.10.0hypothetical protein CARUB_v10023134mg
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLR0HC920.0R0HC92_9BRAS; Uncharacterized protein
STRINGAT2G47850.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein